PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055848
Common NameLOC102587309
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 411aa    MW: 44476.6 Da    PI: 7.2683
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055848genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.86.5e-41882552126
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                            +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s + 
  PGSC0003DMP400055848  88 VPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPs 176
                           689******************************************************************99987777777777555556 PP

                   TCP  89 .........................................kaaksaakskksqksaasalnlakesrakarararert 126
                                                                    ++ +s ++ + +q+   + l+l++ s +++ +r+r ++
  PGSC0003DMP400055848 177 qlrssyfnpnfslsqrrslfqgiglssdrsattllnfqtgnSNPSSLHQFQAKQEMRDNSLDLSETSIEESLSRKRRHD 255
                           6667788888888899999999999887777777777777433333334455555555557777777777777655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-4592265IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92394148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEGGGGDDHH HHHNHQHHQH HQQYRPNNFP FQLLEKKEDE PCSSSSAANN INYPSLAISP  60
SDTNTNINPN SNDLQITVAS TDTAKKPVPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS  180
SYFNPNFSLS QRRSLFQGIG LSSDRSATTL LNFQTGNSNP SSLHQFQAKQ EMRDNSLDLS  240
ETSIEESLSR KRRHDLDLQQ QQEQNEQQMG SYLLQSSSSG TMPATHSSIP ANFWMLTNNN  300
NTQVLGGDPV WTFPSVNNSA AALYRSTMSS GLHFMNFPTP VALLPTQQFG GGGGGGGGNG  360
STLAGEGQLG MVTGLNPYRP CSGVSESQAS GSHSHHGGDD RHDSTSHHNS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133050.0BT013305.1 Lycopersicon esculentum clone 134950R, mRNA sequence.
GenBankGQ4963350.0GQ496335.1 Solanum lycopersicum TCP transcription factor 17 (TCP17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354786.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z001e-65TCP14_ARATH; Transcription factor TCP14
TrEMBLM1D6K80.0M1D6K8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.12e-61TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]